Sequence Analysis, DNA | CU Experts

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Hemolivia and Hepatozoon: Haemogregarines with Tangled Evolutionary Relationships Journal Article
A DNA polymerase III holoenzyme-like subassembly from an extreme thermophilic eubacterium. Journal Article
A Jungle in There: Bacteria in Belly Buttons are Highly Diverse, but Predictable Journal Article
A Network Approach to Analyzing Highly Recombinant Malaria Parasite Genes Journal Article
A complete reference genome improves analysis of human genetic variation Journal Article
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses Journal Article
A fast and accurate method for detection of IBD shared haplotypes in genome-wide SNP data Journal Article
A lysine-rich motif in the phosphatidylserine receptor PSR-1 mediates recognition and removal of apoptotic cells Journal Article
A novel mutation in the ABCR gene in four patients with autosomal recessive Stargardt disease Journal Article
A primate Genome Project deserves high priority Journal Article
A randomized library approach to identifying functional lox site domains for the Cre recombinase Journal Article
A wood-warbler produced through both interspecific and intergeneric hybridization Journal Article
Across the great divide: genetic forensics reveals misidentification of endangered cutthroat trout populations Journal Article
An ancient lineage of slow worms, genus Anguis (Squamata: Anguidae), survived in the Italian Peninsula Journal Article
An empirically derived method for measuring human gut microbiome alpha diversity: Demonstrated utility in predicting health-related outcomes among a human clinical sample Journal Article
Analysis of Double-Stranded RNA from Microbial Communities Identifies Double-Stranded RNA Virus-like Elements Journal Article
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G Journal Article
Antibiotic Resistance Genes in the Vaginal Microbiota of Primates Not Normally Exposed to Antibiotics Journal Article
Antipodean white sharks on a Mediterranean walkabout? Historical dispersal leads to genetic discontinuity and an endangered anomalous population Journal Article
Ape parasite origins of human malaria virulence genes Journal Article
Assessment of Airway Microbiota and Inflammation in Cystic Fibrosis Using Multiple Sampling Methods Journal Article
Association between rare variants in specific functional pathways and human neural tube defects multiple subphenotypes Journal Article
Bacterial Communities Associated with the Lichen Symbiosis Journal Article
Bacterial Communities of Two Parthenogenetic Aphid Species Cocolonizing Two Host Plants across the Hawaiian Islands Journal Article
Bacterial Community Structure Along Moisture Gradients in the Parafluvial Sediments of Two Ephemeral Desert Streams Journal Article
Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics Journal Article
Bacterial communities of Bartonella-Positive fleas: Diversity and community assembly patterns Journal Article
Bacterial community composition of divergent soil habitats in a polar desert Journal Article
Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally Journal Article
Biogeography of the cosmopolitan terrestrial diatom Hantzschia amphioxys sensu lato based on molecular and morphological data Journal Article
Biogeography of the freshwater gastropod,Planorbella trivolvis, in the western United States Journal Article
Botany without borders: barcoding in focus Journal Article
COMPARATIVE ANALYSIS OF COMPLETE CHLOROPLAST GENOME SEQUENCE AND INVERSION VARIATION IN LASTHENIA BURKEI (MADIEAE, ASTERACEAE) Journal Article
COMPARATIVE ANATOMY, MORPHOLOGY, AND MOLECULAR PHYLOGENETICS OF THE AFRICAN GENUS SATANOCRATER (ACANTHACEAE) Journal Article
COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENT HELIANTHUS SPECIES Journal Article
Cell Size Distributions of Soil Bacterial and Archaeal Taxa Journal Article
Characterization of Airborne Microbial Communities at a High-Elevation Site and Their Potential To Act as Atmospheric Ice Nuclei Journal Article
Characterization of growing bacterial populations in McMurdo Dry Valley soils through stable isotope probing with ¹⁸O-water Journal Article
Characterization of the Fecal Microbiome from Non-Human Wild Primates Reveals Species Specific Microbial Communities Journal Article
Characterization of the X-linked murine centrin Cetn2 gene Journal Article
Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning. Journal Article
Co-habiting amphibian species harbor unique skin bacterial communities in wild populations Journal Article
Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data Journal Article
Community and cultivation analysis of arsenite oxidizing biofilms at Hot Creek Journal Article
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients Journal Article
Comparative molecular analysis of endoevaporitic microbial communities Journal Article
Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome Journal Article
Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes Journal Article
Comparison of the genetic variation of captive ring-tailed lemurs with a wild population in Madagascar. Journal Article
Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia Journal Article
Concerted evolution of duplicated mitochondrial control regions in three related seabird species Journal Article
Conservation of a dinucleotide simple sequence repeat locus in sharks Journal Article
Coordinating the impact of structural genomics on the human alpha-helical transmembrane proteome Journal Article
Culture-Independent Analysis of Aerosol Microbiology in a Metropolitan Subway System Journal Article
Defects in Stratum Corneum Desquamation Are the Predominant Effect of Impaired ABCA12 Function in a Novel Mouse Model of Harlequin Ichthyosis Journal Article
Description of a new diatom genus Dorofeyukea gen. nov. with remarks on phylogeny of the family Stauroneidaceae Journal Article
Detecting Differential Transcription Factor Activity from ATAC-Seq Data Journal Article
Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms Journal Article
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Journal Article
Differentially expressed genes match bill morphology and plumage despite largely undifferentiated genomes in a Holarctic songbird Journal Article
Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks Journal Article
Direct sequencing of the human microbiome readily reveals community differences Journal Article
Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals Journal Article
Diversity and Stratification of Archaea in a Hypersaline Microbial Mat Journal Article
Diversity and evolution of the repetitive genomic content in Cannabis sativa Journal Article
Drosophila ATR in double-strand break repair Journal Article
Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB. Journal Article
Effect of monochloramine treatment on the microbial ecology of Legionella and associated bacterial populations in a hospital hot water system Journal Article
Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples Journal Article
Effective Population Size Is Positively Correlated with Levels of Adaptive Divergence among Annual Sunflowers Journal Article
Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers Journal Article
Environmental DNA sequencing primers for eutardigrades and bdelloid rotifers. Journal Article
Eucaryotic diversity in a hypersaline microbial mat Journal Article
Evolutionary Reconstructions of the Transferrin Receptor of Caniforms Supports Canine Parvovirus Being a Re-emerged and Not a Novel Pathogen in Dogs Journal Article
Examining the global distribution of dominant archaeal populations in soil Journal Article
Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data Journal Article
Fgf signaling is required for zebrafish tooth development Journal Article
Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae) Journal Article
Fumarole-Supported Islands of Biodiversity within a Hyperarid, High-Elevation Landscape on Socompa Volcano, Puna de Atacama, Andes Journal Article
Function, expression, specificity, diversity and incompatibility of actinobacteriophage parABS systems Journal Article
Functional Shifts in Unvegetated, Perhumid, Recently-Deglaciated Soils Do Not Correlate with Shifts in Soil Bacterial Community Composition Journal Article
GIGGLE: a search engine for large-scale integrated genome analysis. Journal Article
Gastrointestinal microbiology enters the metagenomics era Journal Article
GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data Journal Article
Genetic analysis of Drosophila melanogaster polytene chromosome region 44D-45F: Loci required for viability and fertility Journal Article
Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation Journal Article
Genomic and Functional Analyses of Rhodococcus equi Phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7 Journal Article
Genotype to Phenotype: A Complex Problem Journal Article
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample Journal Article
HIGH-RESOLUTION MOLECULAR DISCRIMINATION BY RNA Journal Article
Harnessing the power of phylogenomics to disentangle the directionality and signatures of interkingdom host jumping in the parasitic fungal genus Tolypocladium Journal Article
Heterogeneity of Vaginal Microbial Communities within Individuals Journal Article
High temporal variability in airborne bacterial diversity and abundance inside single-family residences Journal Article
High-Resolution Sequence-Function Mapping of Full-Length Proteins Journal Article
High-resolution computational models of genome binding events Journal Article
Historic cycles of fragmentation and expansion in Parnassius smintheus (Papilionidae) inferred using mitochondrial DNA Journal Article
Historical stocking data and 19th century DNA reveal human-induced changes to native diversity and distribution of cutthroat trout Journal Article
Homozygous WNT3 mutation causes tetra-amelia in a large consanguineous family Journal Article
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria Journal Article
IN-VITRO SELECTION OF SMALL RNAS THAT BIND TO ESCHERICHIA-COLI PHENYLALANYL-TRANSFER-RNA SYNTHETASE Journal Article
Identification of Owl Monkey CD4 Receptors Broadly Compatible with Early-Stage HIV-1 Isolates Journal Article
Identification of functional differences between recombinant human α and β cardiac myosin motors Journal Article
Impact of stress on the gut microbiome of free-ranging western lowland gorillas Journal Article
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation Journal Article
In vitro evolution of the DNA binding sites of Escherichia coli methionine repressor, MetJ Journal Article
Infection by Herpes Simplex Virus 1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome Journal Article
Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas) Journal Article
Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution Journal Article
Isolation and characterization of a black-pigmented Corynebacterium sp from a woman with spontaneous abortion Journal Article
Kinetic and secondary structure analysis of Naegleria andersoni GIR1, a group I ribozyme whose putative biological function is site-specific hydrolysis Journal Article
Lake microbial communities are resilient after a whole-ecosystem disturbance Journal Article
Leveraging single-cell genomics to expand the fungal tree of life Journal Article
Limited Phylogeographic Signal in Sex-Linked and Autosomal Loci Despite Geographically, Ecologically, and Phenotypically Concordant Structure of mtDNA Variation in the Holarctic Avian Genus Eremophila Journal Article
Low-Dimensional Representation of Genomic Sequences Journal Article
Major shifts in gut microbiota during development and its relationship to growth in ostriches Journal Article
Malawi Polyomavirus Is a Prevalent Human Virus That Interacts with Known Tumor Suppressors Journal Article
Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome Journal Article
Microbial Species Richness and Metabolic Activities in Hypersaline Microbial Mats: Insight into Biosignature Formation Through Lithification Journal Article
Microbial community succession in an unvegetated, recently deglaciated soil Journal Article
Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas Journal Article
Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica Journal Article
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications Journal Article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Journal Article
Molecular Phylogeny of Amphora sensu lato (Bacillariophyta): An Investigation into the Monophyly and Classification of the Amphoroid Diatoms Journal Article
Molecular and metabolic characterization of cold-tolerant alpine soil Pseudomonas sensu stricto Journal Article
Molecular cloning, sequencing, and overexpression of the structural gene encoding the delta subunit of Escherichia coli DNA polymerase III holoenzyme. Journal Article
Molecular identification of potential pathogens in water and air of a hospital therapy pool Journal Article
Molecular mapping of the rust resistance gene R-4 to a large NBS-LRR cluster on linkage group 13 of sunflower Journal Article
Molecular phylogeny of the diatom genera Amphora and Halamphora (Bacillariophyta) with a focus on morphological and ecological evolution Journal Article
Morphological, molecular, and ultrastructural characterization of Rozella rhizoclosmatii, a new species in Cryptomycota Journal Article
Morphology, Molecular Phylogeny, and Ecology of Binucleata daphniae n. g., n. sp (Fungi: Microsporidia), a Parasite of Daphnia magna Straus, 1820 (Crustacea: Branchiopoda) Journal Article
Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes Journal Article
Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 Are Identified in Individuals with Congenital Hypogonadotropic Hypogonadism Journal Article
Mycangia of Ambrosia Beetles Host Communities of Bacteria Journal Article
Naloxone-precipitated morphine withdrawal behavior and brain IL-1β expression: Comparison of different mouse strains Journal Article
New perspective on uncultured bacterial phylogenetic division OP11 Journal Article
Nitrogen deposition alters plant-fungal relationships: linking belowground dynamics to aboveground vegetation change Journal Article
Not all animals need a microbiome Journal Article
Novel Device to Sample the Esophageal Microbiome-The Esophageal String Test Journal Article
Novosphingobium and Its Potential Role in Chronic Obstructive Pulmonary Diseases: Insights from Microbiome Studies Journal Article
Number of Nevi and early-life ambient UV exposure are associated with BRAF-mutant melanoma Journal Article
Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood Journal Article
Opportunistic pathogens enriched in showerhead biofilms Journal Article
Out of America to Africa or Asia: Inference of Dispersal Histories Using Nuclear and Plastid DNA and the S-RNase Self-incompatibility Locus Journal Article
Phenotypic analysis of separation-of-function alleles of MEI-41, Drosophila ATM/ATR Journal Article
Phylogenetic Relationships and Functional Genes: Distribution of a Gene (mnxG) Encoding a Putative Manganese-Oxidizing Enzyme in Bacillus Species Journal Article
Phylogenetic approaches for describing and comparing the diversity of microbial communities Journal Article
Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems Journal Article
Phylogenetic conservation of disulfide-linked, dimeric acetylcholine receptor pentamers in southern ocean electric rays Journal Article
Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes) Journal Article
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat Journal Article
Phylogeny and Ecophysiology of Opportunistic "Snow Molds" from a Subalpine Forest Ecosystem Journal Article
Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life Journal Article
Phylogeny and historical biogeography of the swallow family (Hirundinidae) inferred from comparisons of thousands of UCE loci Journal Article
Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes Journal Article
Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex Journal Article
Population genetic structure in Atlantic and Pacific Ocean common murres (Uria aalge): natural replicate tests of post-Pleistocene evolution Journal Article
Prehistoric mitochondrial DNA of domesticate animals supports a 13th century exodus from the northern US southwest Journal Article
Prevalence and genetic diversity of Blastocystis in family units living in the United States Journal Article
Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples Journal Article
Pushing north one bottleneck at a time: site frequency spectra tell the history of Sitka spruce Journal Article
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale Journal Article
Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes Journal Article
Quantitative Tracking of Combinatorially Engineered Populations with Multiplexed Binary Assemblies Journal Article
REO1 and ROX1 are alleles of the same gene which encodes a transcriptional repressor of hypoxic genes in Saccharomyces cerevisiae Journal Article
RNA Pol II transcription model and interpretation of GRO-seq data Journal Article
Recent fieldwork and fungarium studies double known diversity of Chlorosplenium and improve understanding of species distributions Journal Article
Recent host-shifts in ranaviruses: signatures of positive selection in the viral genome Journal Article
Recent nonhybrid origin of sunflower ecotypes in a novel habitat Journal Article
Reductions in complexity of mitochondrial genomes in lichen-forming fungi shed light on genome architecture of obligate symbioses Journal Article
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants Journal Article
Seasonal Shifts in Diet and Gut Microbiota of the American Bison (Bison bison) Journal Article
Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains Journal Article
Selection and constraint underlie irreversibility of tooth loss in cypriniform fishes Journal Article
Short-term temporal variability in airborne bacterial and fungal populations Journal Article
Slow worm, Anguis fragilis (Reptilia: Anguidae) as a species complex: Genetic structure reveals deep divergences Journal Article
Soil CO₂ flux and photoautotrophic community composition in high-elevation, 'barren' soil Journal Article
Soil bacterial and fungal communities across a pH gradient in an arable soil Journal Article
Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes Journal Article
Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain Journal Article
Spatiotemporally consistent genomic signatures of reproductive isolation in a moving hybrid zone Journal Article
Species-Specific Features of DARC, the Primate Receptor for Plasmodium vivax and Plasmodium knowlesi Journal Article
Species-level diversification of African dwarf crocodiles (Genus Osteolaemus): A geographic and phylogenetic perspective Journal Article
Structural implications of novel diversity in eucaryal RNase P RNA Journal Article
Structure and function of Pet100p, a molecular chaperone required for the assembly of cytochrome c oxidase in Saccharomyces cerevisiae Journal Article
Subsurface microbial diversity in deep-granitic-fracture water in Colorado Journal Article
Synergistic cooperation of TFE3 and Smad proteins in TGF-β-induced transcription of the plasminogen activator inhibitor-1 gene Journal Article
Synthesis aided design: The biological design-build-test engineering paradigm? Journal Article
THE C-ELEGANS KSR-1 GENE ENCODES A NOVEL RAF-RELATED KINASE INVOLVED IN RAS-MEDIATED SIGNAL-TRANSDUCTION Journal Article
The Abundance of Pink-Pigmented Facultative Methylotrophs in the Root Zone of Plant Species in Invaded Coastal Sage Scrub Habitat Journal Article
The ENCODE (ENCyclopedia of DNA elements) Project Journal Article
The Effects of Airway Microbiome on Corticosteroid Responsiveness in Asthma Journal Article
The Hawaiian freshwater algae biodiversity survey (2009-2014): systematic and biogeographic trends with an emphasis on the macroalgae Journal Article
The Human Nasal Microbiota and Staphylococcus aureus Carriage Journal Article
The Role of PIEZO2 in Human Mechanosensation Journal Article
The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project Journal Article
The amphibian skin-associated microbiome across species, space and life history stages Journal Article
The complete mitochondrial genome of the Warm Springs pupfish, Cyprinodon nevadensis pectoralis Journal Article
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms Journal Article
The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae). Journal Article
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling Journal Article
The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism Journal Article
The metabotropic glutamate receptor subtype 5 mediates sensitivity to the sedative properties of ethanol Journal Article
The origins of weedy rice Journal Article
The phylogenetic placement of hypocrealean insect pathogens in the genus Polycephalomyces: An application of One Fungus One Name Journal Article
The phylogenetic relationships of the extant pelicans inferred from DNA sequence data Journal Article
The rate and pattern of cladogenesis in microbes Journal Article
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements Journal Article
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution Journal Article
The transcription start site landscape of C. elegans Journal Article
Tracking down the sources of experimental contamination in microbiome studies Journal Article
Transcription factor binding variation in the evolution of gene regulation Journal Article
Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ loss Journal Article
Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species Journal Article
Triton's trident: cryptic Neogene divergences in a marine clam (Lasaea australis) correspond to Australia's three temperate biogeographic provinces Journal Article
ULTRA-BARCODING IN CACAO (THEOBROMA SPP.; MALVACEAE) USING WHOLE CHLOROPLAST GENOMES AND NUCLEAR RIBOSOMAL DNA Journal Article
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat Journal Article
Unique motifs and hydrophobic interactions shape the binding of modified DNA ligands to protein targets Journal Article
Unlocking the potential of metagenomics through replicated experimental design Journal Article
Variations in the microbiome due to storage preservatives are not large enough to obscure variations due to factors such as host population, host species, body site, and captivity Journal Article
Whole transcriptome analysis of the fasting and fed Burmese python heart: insights into extreme physiological cardiac adaptation Journal Article

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